<h4>TE Toolkit: TE chromosomal distribution search module</h4>

Hit the button below (Initialize Visualization Panel) to load TE annotation data and draw example plot.

Sequences

chromosome 1

chromosome 2

chromosome 3

chromosome 4

chromosome 5

chromosome 6

chromosome 7

chromosome 8

chromosome 9

chromosome 10

Window size (×10⁵bp)

Plot height (px)

Upper track height

Lower track height

Upper track margin

Lower track margin

LTR-RTs are classified into two superfamilies: RLG (Gypsy) and RLC (Copia)

TIR TEs are classified into five major superfamilies: DTA (hAT), DTC (CACTA), DTH (PIF/Harbinger), DTM (Mutator) and DTT(Tc1/Mariner)

Hit the button below (Initialize Visualization Panel) to load TE annotation data and draw example plot.

Sequences

chromosome 1

chromosome 2

chromosome 3

chromosome 4

chromosome 5

chromosome 6

chromosome 7

chromosome 8

chromosome 9

chromosome 10

Window size (×10⁵bp)

Plot height (px)

Upper track height

Lower track height

Upper track margin

Lower track margin

LTR-RTs are classified into two superfamilies: RLG (Gypsy) and RLC (Copia)

TIR TEs are classified into five major superfamilies: DTA (hAT), DTC (CACTA), DTH (PIF/Harbinger), DTM (Mutator) and DTT(Tc1/Mariner)

Hit the button below (Initialize Visualization Panel) to load TE annotation data and draw example plot.

Sequences

chromosome 1

chromosome 2

chromosome 3

chromosome 4

chromosome 5

chromosome 6

chromosome 7

chromosome 8

chromosome 9

chromosome 10

Window size (×10⁵bp)

Plot height (px)

Upper track height

Lower track height

Upper track margin

Lower track margin

LTR-RTs are classified into two superfamilies: RLG (Gypsy) and RLC (Copia)

TIR TEs are classified into five major superfamilies: DTA (hAT), DTC (CACTA), DTH (PIF/Harbinger), DTM (Mutator) and DTT(Tc1/Mariner)

Hit the button below (Initialize Visualization Panel) to load TE annotation data and draw example plot.

Sequences

chromosome 1

chromosome 2

chromosome 3

chromosome 4

chromosome 5

chromosome 6

chromosome 7

chromosome 8

chromosome 9

chromosome 10

chromosome 11

chromosome 12

chromosome 13

chromosome 14

chromosome 15

chromosome 16

chromosome 17

chromosome 18

chromosome 19

Window size (×10⁵bp)

Plot height (px)

Upper track height

Lower track height

Upper track margin

Lower track margin

LTR-RTs are classified into two superfamilies: RLG (Gypsy) and RLC (Copia)

TIR TEs are classified into five major superfamilies: DTA (hAT), DTC (CACTA), DTH (PIF/Harbinger), DTM (Mutator) and DTT(Tc1/Mariner)

Hit the button below (Initialize Visualization Panel) to load TE annotation data and draw example plot.

Sequences

chromosome 1A

chromosome 1B

chromosome 1C

chromosome 1D

chromosome 2A

chromosome 2B

chromosome 2C

chromosome 2D

chromosome 3A

chromosome 3B

chromosome 3C

chromosome 3D

chromosome 4A

chromosome 4B

chromosome 4C

chromosome 4D

chromosome 5A

chromosome 5B

chromosome 5C

chromosome 5D

chromosome 6A

chromosome 6B

chromosome 6C

chromosome 6D

chromosome 7A

chromosome 7B

chromosome 7C

chromosome 7D

chromosome 8A

chromosome 8B

chromosome 8C

chromosome 8D

Window size (×10⁵bp)

Plot height (px)

Upper track height

Lower track height

Upper track margin

Lower track margin

LTR-RTs are classified into two superfamilies: RLG (Gypsy) and RLC (Copia)

TIR TEs are classified into five major superfamilies: DTA (hAT), DTC (CACTA), DTH (PIF/Harbinger), DTM (Mutator) and DTT(Tc1/Mariner)

Hit the button below (Initialize Visualization Panel) to load TE annotation data and draw example plot.

Sequences

chromosome 1

chromosome 2

chromosome 3

chromosome 4

chromosome 5

chromosome 6

chromosome 7

chromosome 8

chromosome 9

chromosome 10

chromosome 11

chromosome 12

chromosome 13

chromosome 14

chromosome 15

chromosome 16

chromosome 17

chromosome 18

chromosome 19

Window size (×10⁵bp)

Plot height (px)

Upper track height

Lower track height

Upper track margin

Lower track margin

LTR-RTs are classified into two superfamilies: RLG (Gypsy) and RLC (Copia)

TIR TEs are classified into five major superfamilies: DTA (hAT), DTC (CACTA), DTH (PIF/Harbinger), DTM (Mutator) and DTT(Tc1/Mariner)